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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Tilapia-Tilapia radiation hybrid map
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG3.rev_LOD4-RH3
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Est
microsatellite_marker
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic Linkage [ View Map Type Info ]
Map Set Name: Tilapia - A high-resolution map of the tilapia genome: a resource for stud [ View Map Set Info ]
Map Name: LG3.rev_LOD4-RH3
Map Start: 0.00 cM
Map Stop: 47.10 cM
Features by Type:
3 Est
2 microsatellite_marker
4 SNP
9 Total

Map Features

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Items 1 to 9 of 9.
Tilapia - A high-resolution map of the tilapia genome: a resource for stud - LG3.rev_LOD4-RH3
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
SNP_244316577 SNP 0.00 No other positions
EST_253831740 Est 3.60 No other positions
RBEST_C338 Est 10.50 No other positions
GM024 microsatellite_marker 18.40 Tilapia - Tilapia map - LG3 GM024 microsatellite_marker 35.00 (cM) Automated name-based View Maps
EE723931_PACS1 Est 25.70 No other positions
SNP_244316722 SNP 32.20 No other positions
SNP_244316710 SNP 39.70 No other positions
SNP_244316510 SNP 41.70 No other positions
GM271 microsatellite_marker 47.10 Tilapia - Tilapia map - LG3 GM271 microsatellite_marker 13.00 (cM) Automated name-based View Maps