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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Tilapia-Tilapia radiation hybrid map
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps ORPH_LOD4.1-RH4
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Bes_With_Gene
Contig
GENE
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic Linkage [ View Map Type Info ]
Map Set Name: Tilapia - A high-resolution map of the tilapia genome: a resource for stud [ View Map Set Info ]
Map Name: ORPH_LOD4.1-RH4
Map Start: 0.00 cM
Map Stop: 18.20 cM
Features by Type:
1 Bes_With_Gene
3 Contig
1 GENE
5 Total

Map Features

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Items 1 to 5 of 5.
Tilapia - A high-resolution map of the tilapia genome: a resource for stud - ORPH_LOD4.1-RH4
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
C243 Contig 0.00 No other positions
WG0AAA31YO21HM1_SOX6A Bes_With_Gene 6.30 No other positions
DQ011047_PHTF1 GENE 9.90 No other positions
C860 Contig 11.30 No other positions
C321 Contig 18.20 No other positions