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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Malawi cichlids-Metriaclima x Labeotropheus
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG12
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Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
GENE
microsatellite_marker
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
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Map Details

Map Type: Genetic Linkage [ View Map Type Info ]
Map Set Name: Malawi cichlids - Directional selection has shaped the oral jaws of Lake Malawi ci [ View Map Set Info ]
Map Name: LG12
Map Start: 0.00 cM
Map Stop: 62.64 cM
Features by Type:
4 GENE
7 microsatellite_marker
3 SNP
14 Total

Map Features

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Items 1 to 14 of 14.
Malawi cichlids - Directional selection has shaped the oral jaws of Lake Malawi ci - LG12
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Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
SNP39 SNP 0.00 No other positions
SNP33 SNP 1.60 No other positions
sema3F GENE 1.66 No other positions
E3 GENE 2.77 No other positions
ropsin GENE 2.87 No other positions
UNH2050 microsatellite_marker 5.90 No other positions
UNH169 microsatellite_marker 15.60 Tilapia - Tilapia map - LG5 UNH169 microsatellite_marker 38.00 (cM) Automated name-based View Maps
Tilapia - Tilapia radiation hybrid map - LG5.rev_LOD6.9-RH6 UNH169 microsatellite_marker 73.40 (cM) Automated name-based View Maps
GM264 microsatellite_marker 18.71 Tilapia - Tilapia radiation hybrid map - LG5.rev_LOD6.9-RH6 GM264_UNL microsatellite_marker 98.40 (cM) Automated name-based View Maps
cski GENE 25.62 Tilapia - Tilapia map - LG5 cski GENE 18.00 (cM) Automated name-based View Maps
UNH2139 microsatellite_marker 32.58 Burtoni - Burtoni Map - LG3 UNH2139 microsatellite_marker 83.50 (cM) Automated name-based View Maps
UNH2202 microsatellite_marker 46.42 No other positions
UNH2168 microsatellite_marker 49.58 No other positions
UNH2073 microsatellite_marker 53.60 No other positions
SNP14 SNP 62.64 No other positions