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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Malawi cichlids-Metriaclima x Labeotropheus
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG19
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
microsatellite_marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
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Map Details

Map Type: Genetic Linkage [ View Map Type Info ]
Map Set Name: Malawi cichlids - Directional selection has shaped the oral jaws of Lake Malawi ci [ View Map Set Info ]
Map Name: LG19
Map Start: 0.00 cM
Map Stop: 18.78 cM
Features by Type:
5 microsatellite_marker
5 Total

Map Features

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Items 1 to 5 of 5.
Malawi cichlids - Directional selection has shaped the oral jaws of Lake Malawi ci - LG19
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
GM493 microsatellite_marker 0.00 Tilapia - Tilapia map - LG11 GM493 microsatellite_marker 56.00 (cM) Automated name-based View Maps
GM401 microsatellite_marker 5.83 Tilapia - Tilapia map - LG11 GM401 microsatellite_marker 50.00 (cM) Automated name-based View Maps
Tilapia - Tilapia radiation hybrid map - LG11_LOD6.2-RH5 GM401 microsatellite_marker 48.60 (cM) Automated name-based View Maps
UNH2065 microsatellite_marker 14.52 No other positions
GM131a microsatellite_marker 17.24 No other positions
GM399a microsatellite_marker 18.78 Tilapia - Tilapia radiation hybrid map - LG11_LOD6.2-RH5 GM399 microsatellite_marker 83.40 (cM) Automated name-based View Maps