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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Malawi cichlids-Metriaclima x Labeotropheus
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG8
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
GENE
microsatellite_marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic Linkage [ View Map Type Info ]
Map Set Name: Malawi cichlids - Directional selection has shaped the oral jaws of Lake Malawi ci [ View Map Set Info ]
Map Name: LG8
Map Start: 0.00 cM
Map Stop: 31.02 cM
Features by Type:
1 GENE
4 microsatellite_marker
5 Total

Map Features

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Items 1 to 5 of 5.
Malawi cichlids - Directional selection has shaped the oral jaws of Lake Malawi ci - LG8
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
GM150 microsatellite_marker 0.00 Tilapia - Tilapia map - LG3 GM150 microsatellite_marker 49.00 (cM) Automated name-based View Maps
Tilapia - Tilapia radiation hybrid map - LG3_LOD5.7-RH31 GM150 microsatellite_marker 9.90 (cM) Automated name-based View Maps
UNH2204 microsatellite_marker 12.00 Burtoni - Burtoni Map - LG10 UNH2204 microsatellite_marker 22.90 (cM) Automated name-based View Maps
UNH2054 microsatellite_marker 21.49 No other positions
clc5 GENE 25.55 No other positions
GM204 microsatellite_marker 31.02 Tilapia - Tilapia map - LG3 GM204 microsatellite_marker 2.00 (cM) Automated name-based View Maps