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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Malawi cichlids-Cynotilapia x Pseudotropheus
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG11
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
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Map Details

Map Type: Genetic Linkage [ View Map Type Info ]
Map Set Name: Malawi cichlids - Genetic interactions controlling sex and color establish the pot [ View Map Set Info ]
Map Name: LG11
Map Start: 0.00 cM
Map Stop: 57.01 cM
Features by Type:
22 SNP
22 Total

Map Features

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Items 1 to 22 of 22.
Malawi cichlids - Genetic interactions controlling sex and color establish the pot - LG11
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
22366 SNP 0.00 No other positions
53630 SNP 0.16 No other positions
2470 SNP 1.66 No other positions
17454 SNP 2.34 No other positions
46509 SNP 5.83 No other positions
42944 SNP 10.74 No other positions
28843 SNP 15.68 No other positions
26374 SNP 16.11 No other positions
55644 SNP 17.02 No other positions
27323 SNP 20.19 No other positions
17188 SNP 24.51 No other positions
53007 SNP 29.05 No other positions
2939 SNP 35.67 No other positions
18895 SNP 47.81 No other positions
31046 SNP 49.53 No other positions
20057 SNP 53.85 No other positions
41498 SNP 55.80 No other positions
1846 SNP 55.90 No other positions
31936 SNP 55.98 No other positions
31355 SNP 56.09 No other positions
27329 SNP 56.15 No other positions
52119 SNP 57.01 No other positions