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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Malawi cichlids-Cynotilapia x Pseudotropheus
(Reference Set)
Min.
Correspondences
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Maps LG14
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Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic Linkage [ View Map Type Info ]
Map Set Name: Malawi cichlids - Genetic interactions controlling sex and color establish the pot [ View Map Set Info ]
Map Name: LG14
Map Start: 0.00 cM
Map Stop: 54.34 cM
Features by Type:
22 SNP
22 Total

Map Features

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Items 1 to 22 of 22.
Malawi cichlids - Genetic interactions controlling sex and color establish the pot - LG14
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
47999 SNP 0.00 No other positions
27489 SNP 0.12 No other positions
2436 SNP 3.55 No other positions
43481 SNP 11.93 No other positions
19583 SNP 17.64 No other positions
19640 SNP 19.39 No other positions
9843 SNP 19.54 No other positions
41466 SNP 23.48 No other positions
10198 SNP 36.70 No other positions
1564 SNP 39.85 No other positions
12148 SNP 41.66 No other positions
38298 SNP 42.11 No other positions
107246791 SNP 50.24 No other positions
20716 SNP 51.44 No other positions
21532 SNP 51.84 No other positions
31823 SNP 52.05 No other positions
29554 SNP 52.87 No other positions
12392 SNP 53.46 No other positions
46123 SNP 53.57 No other positions
35593 SNP 53.61 No other positions
20327 SNP 53.66 No other positions
39120 SNP 54.34 No other positions