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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Malawi cichlids-Cynotilapia x Pseudotropheus
(Reference Set)
Min.
Correspondences
Align Vertically
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Maps LG15
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic Linkage [ View Map Type Info ]
Map Set Name: Malawi cichlids - Genetic interactions controlling sex and color establish the pot [ View Map Set Info ]
Map Name: LG15
Map Start: 0.00 cM
Map Stop: 49.09 cM
Features by Type:
19 SNP
19 Total

Map Features

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Items 1 to 19 of 19.
Malawi cichlids - Genetic interactions controlling sex and color establish the pot - LG15
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
9578 SNP 0.00 No other positions
33812 SNP 3.65 No other positions
19946 SNP 4.39 No other positions
12159 SNP 4.92 No other positions
18643 SNP 5.41 No other positions
26913 SNP 5.97 No other positions
12443 SNP 6.00 No other positions
11775 SNP 6.06 No other positions
28999 SNP 6.46 No other positions
42367 SNP 7.41 No other positions
31474 SNP 7.50 No other positions
50365 SNP 7.97 No other positions
4428 SNP 8.31 No other positions
9091 SNP 9.85 No other positions
44647 SNP 14.03 No other positions
26338 SNP 15.72 No other positions
50893 SNP 28.76 No other positions
876 SNP 42.80 No other positions
15652 SNP 49.09 No other positions