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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Malawi cichlids-Cynotilapia x Pseudotropheus
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG2
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
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Map Details

Map Type: Genetic Linkage [ View Map Type Info ]
Map Set Name: Malawi cichlids - Genetic interactions controlling sex and color establish the pot [ View Map Set Info ]
Map Name: LG2
Map Start: 0.00 cM
Map Stop: 53.40 cM
Features by Type:
24 SNP
24 Total

Map Features

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Items 1 to 24 of 24.
Malawi cichlids - Genetic interactions controlling sex and color establish the pot - LG2
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
7400 SNP 0.00 No other positions
6948 SNP 2.75 No other positions
8483 SNP 6.81 No other positions
21145 SNP 8.74 No other positions
39926 SNP 10.65 No other positions
44975 SNP 28.67 No other positions
34847 SNP 30.24 No other positions
35854 SNP 32.79 No other positions
47373 SNP 37.46 No other positions
10155 SNP 39.64 No other positions
25740 SNP 44.69 No other positions
5516 SNP 45.27 No other positions
33087 SNP 45.97 No other positions
29004 SNP 45.97 No other positions
55359 SNP 45.97 No other positions
27268 SNP 47.23 No other positions
35794 SNP 47.81 No other positions
17972 SNP 49.20 No other positions
12998 SNP 51.23 No other positions
28441 SNP 51.40 No other positions
33478 SNP 51.52 No other positions
103406465 SNP 52.11 No other positions
34359 SNP 52.63 No other positions
3925 SNP 53.40 No other positions