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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Malawi cichlids-Cynotilapia x Pseudotropheus
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG3
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
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Map Details

Map Type: Genetic Linkage [ View Map Type Info ]
Map Set Name: Malawi cichlids - Genetic interactions controlling sex and color establish the pot [ View Map Set Info ]
Map Name: LG3
Map Start: 0.00 cM
Map Stop: 57.48 cM
Features by Type:
37 SNP
37 Total

Map Features

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Items 1 to 25 of 37.       of 2 | Next
Malawi cichlids - Genetic interactions controlling sex and color establish the pot - LG3
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
38890 SNP 0.00 No other positions
13048 SNP 1.75 No other positions
11787 SNP 1.82 No other positions
10311 SNP 1.83 No other positions
19115 SNP 1.89 No other positions
38007 SNP 1.92 No other positions
45564 SNP 2.32 No other positions
16804 SNP 2.73 No other positions
34580 SNP 2.86 No other positions
18266 SNP 3.14 No other positions
1827 SNP 3.14 No other positions
15338 SNP 3.15 No other positions
46478 SNP 3.15 No other positions
54432 SNP 3.64 No other positions
50144 SNP 4.70 No other positions
32451 SNP 6.52 No other positions
45766 SNP 6.71 No other positions
26075 SNP 7.90 No other positions
45312 SNP 8.06 No other positions
22654 SNP 12.70 No other positions
51426 SNP 13.29 No other positions
5886 SNP 15.25 No other positions
44970 SNP 15.52 No other positions
32669 SNP 18.39 No other positions
30431 SNP 20.68 No other positions